PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10036032
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family SRS
Protein Properties Length: 257aa    MW: 27552 Da    PI: 8.3368
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10036032genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702212.21.2e-65792433153
       DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaa.asaaeaaskrkrel.kskkqsalsstklssaeskk 98 
                  s ta+CqdCGnqakkdC h+RCRtCCksrgfdCathvkstWvp+a+rrerq ++aa++     +sa+++  k++r   +++++++ s+t++s++++++
  Lus10036032  79 SSTATCQDCGNQAKKDCPHRRCRTCCKSRGFDCATHVKSTWVPSARRRERQLMTAATAGGGGcSSASTSGVKKPRLIgSQTTATTNSHTSTSNTTPSR 176
                  67899*********************************************999888776655145578888999988555667777889999999999 PP

       DUF702  99 eletss............lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                  + +t+s            lP +v+++avf+cvrv++v+dge+e+aYq+av+igGh+fkG+LydqG+e
  Lus10036032 177 SYDTTSshhhqdagfretLPGQVRAAAVFKCVRVTAVEDGEDEYAYQAAVKIGGHLFKGVLYDQGVE 243
                  99998899*********************************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051423.4E-6081243IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016236.9E-2783125IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.1E-28195242IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0048364Biological Processroot development
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MEGGDDDNHH NLFQRKIGSS SSSGIQFWQH YNNSIKKNNP PSSSILDPNN NTNNNNNNNN  60
NLPQSTGVVM NSMMATSSSS TATCQDCGNQ AKKDCPHRRC RTCCKSRGFD CATHVKSTWV  120
PSARRRERQL MTAATAGGGG CSSASTSGVK KPRLIGSQTT ATTNSHTSTS NTTPSRSYDT  180
TSSHHHQDAG FRETLPGQVR AAAVFKCVRV TAVEDGEDEY AYQAAVKIGG HLFKGVLYDQ  240
GVEGRGADGN FPDDEL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002530898.12e-87PREDICTED: protein LATERAL ROOT PRIMORDIUM 1
SwissprotQ94CK93e-68LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBLB9SY292e-87B9SY29_RICCO; Transcription factor, putative
STRINGGLYMA02G44860.21e-83(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65043351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.24e-61Lateral root primordium (LRP) protein-related